Bad pricing, I'd have to agree on; however, you could talk a dealer down quite a lot if you tried. My first Mysti was a dealer demo car, and we paid mostly cash. Hmmm... wonder why the dealer was driving a Mystique instead of a Contour, Taurus, or Mustang???! (His other demo was a Cougar, but safety really sucked in those, imo) My 2nd was after I totaled the 1st, had an insurance check, and argued 1400 miles as "used"

Most of the world still wanted either a Taurus or a Camry, though. I almost bought a Camry black&tan for my 2nd. The mid 90's to early 0's have been a really sucky time for Ford, bad management, bad business, bad design... only just now are they recovering. They learned valueable lessons from Contique for the "Fusilan" now. If Ford would kick out the unions, I'd buy a Fusion or Escape instantly.
Real problems the cars have, especially now, is mileage and horsepower underperform compared to new(er) cars now. I get 25mpg, and the V6 is rated about 170hp, right? SVT got 200hp, iirc. At the time those were a lot for a 2.6L domestic V6. Now... it sucks. You can find 1.8L - 2.4L 4cyls that get 170-220hp easy, now, with 30mpg.
post-98 Mystique was awesome, but underexposed and underpromoted. Contour aesthetics and options really did suck. The Sport (SE) = Mystique LS, but far worse styling and options, for about the same price. Didn't even have fold-down rear seats! That's dumb.
There really hasn't been any reliability issues, imo, that aren't personally explained by a bad climate (where my Mysti was originally dealered) or bad gas, or bad me. If these cars were crap, some of us wouldn't have 200k miles on them and going strong. There was the coolant tank sensor recall, but meh. Dashboard warp, but meh. They're MUCH, much easier to work on than any VW.