Well the Y-pipe should make it run leaner. More air in/more air out principle.
The chip would help fatten it up though. (in theory - the only 2 codes I've seen personally increase fuel trim)
Yes, you car looks to be running lean. Then the second run it ran extremely rich. Heatsoak maybe? Yes it's costing power.
Cleaned the MAF lately? Reset the PCM lately? 2 things that may help...
Odd at no dip at secondary activation. In power or A/F ratio. Cleaned your intakes? Are the secondaries cracked?
The curves themselves look very nice and flat. (TQ looks outstanding!) HP lays down a lot, but still linear.
Good numbers for an ATX definitely...