On my timing chain, there are no colored links. There were some faint(and I mean really faint) white marks on three of the links. Since there are no permanent marks on the chain(one of mine rubbed off when I wiped it with a towel), you can make your own marks. According to the 2002 Taurus workshop manual(freshly downloaded):
1. There should be 12 chain links between the camshaft timing marks.
2. There should be 27 chain links between the camshaft and crankshaft timing marks.
3. There should be 30 chain links between the crankshaft and camshaft timing marks.
This corresponds to the marks I thought I had correct. It seems that not too many people are using the 3L cams, but this info might help those who do the swap with the 3L cams and timing chains.