Mine is doing the same thing, I believe it is the switch. There aren't any fuses or anything listed in the manual involving the Sunroof.
Mine has gotten stuck open twice now, and when you hit the button nothing happens, if you listen really closely try and open it farther and you can here the motor turning but when you try to close i get nothing.
Therefore i belive the switch is the culprit.
Joseph
1999 Contour SVT ~ Black w/Tan
Current Mods: Fog light rewire, 20% Tint, SVT Banner,Rockford Fosgate RFX-8340, 2-12" Bostwick SPL Subs & Audiobahn 600x2
Future Mods: Knauberizing it, lowering
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