Well I got my car to the dealership. They deny everything like usual and every person that worked there before has left. Even the mechanic that worked on my car is gone. They said they had nothing to do with any of the bolts missing in the front end (radiator and air conditioning). I even called the ford customer line. Customer help seemed cool but nothing came of it. They called and talked to the dealer but it seems that this problem is different then the last (BS) and they won't repair it for free. They said that they would charge me around $900 for it. They are guessing it is a bent shift fork. What I don't get is why I was told it was just the cable last time. They should have fixed everything so I wouldn't have to take the tranny out twice. I talked to the manager today and he said well we aready have 5hours into it some how even though they haven't taken anything apart. I retold the whole situation and he said he would take care of the bill. So I am back to where I started. I figured that I will spend the money this summer on a flywheel and LSD and get the transmission fixed in the process. I can drive it so I guess its not all that bad. 
1999 V6 MTX Black Cougar
Jacobs ignition system, Borla dual exhaust, Sho shop y pipe and hi flow cat, gutted precats with MIL eliminators, IAT rewire, vitek ignition wires, SCA CAI with monster flow filter, Unorthodox racing pulley, BAT rear strut brace, Battery relocation to trunk, eibachs, KVR crossdrilled/slotted rotors, freedom design strut brace and Tuned S-AFC
Waiting to be installed:
svt engine with 11k miles on it/ fidanza flywheel/Quaife/energy suspension engine mount inserts.
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