Well I'm not celebrating yet.. but so far after swapping the coil pack and actually going back to the FMS wires and resetting the PCM the car seems to be running better. It has about 3 maybe 4 miles on it and about 15 minutes of idle time with no CEL's. I pulled a few of the plugs and they seem to be clearing up from carbon fouled to looking half way normal. I am thinking it would probably be a good idea to replace them again now that it seems to be running cleaner. I'll run the car more tomorrow before it gets dark and we'll see how it does.
-Nate