Ahhh, I figured it out. Apparently when I tipped the motor over and everything fell out, the big red gear rolled under something and that is what I was missing. Got the red gear, put it in it's place and now the motor starts and stops as it should. I manually cranked the window to the closed position, set the motor to the closed window position and now it works great. I just got to get some grease to redo the rails.
Thanks!

Tim
'00 SVT