Call Terry, he did it to my sister's car (96SE), which now has a 2000 cougar engine and transmission. There are more issues than one would think. Converting from rod to cable shift, moving brake lines, engine mounts, cutting holes in the floor, removing dollars from your wallet, etc.
But, joking aside it has made one AMAZING car. The build quality and toys of a 96, with the power and smoothness of a 2000 (+) DMD and Quaife.