They've previously had some problems (while my car was there)... and they have a new manager (Owners son) and lead mechanic. I showed the new lead mechanic some of the stuff today, like the misaligned radiator, non-tightened strut towers... and explained to him that the subframe wasn't reinstalled straight. He agreed that the person who did the tranny install did a half assed job... and that the damage to the front bumper cover looked like it happened when they took it off the rack. Getting the manager to admit guilt will be another story though.
I'm dropping the car off in the morning... they're going to reattach the missing parts (fender splash shield (for engine accessories), power steering line bolts, etc..) and are supposed to realign the subframe, fix the cv boot. I'm sure the cosmetic stuff will be a secondary battle... but with the pictures we took right after I picked the car up... I should be able to at least drive it again after tomorrow.
Oh... and they destroyed the wiring on one of my MIL'd o2's. Just annoying... but I'll have to solder up a new one.
Now... the cosmetic stuff. I get the feeling that the manager is going to blow it off. 2 of my brothers had their cars in the same tranny shop as mine, while mine was there. All 3 of our cars have tranny fluid on them. My brothers were blown off by the guy, when they said they ruined their paint. They're waiting to see what the guy says about my paint before we contact a local tv station that does consumer protection (and that station JUST did a review of this place and said it was a great tranny shop!!

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Tranny fluid ruins paint... and it's all over my car... so they'd be better off fixing it as I have plenty of time at work to make phone calls to various organizations.