It all depends on who does the labor and what you can find for parts/prices. If your paying someone then most likely its not worth it. You really need to be able to find the parts really cheap to make it worthwhile. I was the first to do this and I kept my ATX subrframe as well. It has been this way for about 9 months now. I also have a 96 mystique.
ATX MTX swap, rear drum disc swap, drilled rotors, ported intake, optim throttle body, CAI, 7.5L MAF, adj. fuel regulator, longtube headers, underdrive pulley, no EGR, low inpedence bigger injectors, 2002 Focus Swap
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