yep:
16" wheels;
different strut valving;
Rod Shifter is 95-97; later on all models have cable shifter (there are variations in details year to year)
Actually smaller sway bar in the front and bigger in the back;
Front rotors are bigger. Early '98 SVT have different calipers and bigger pads, later it's just bigger rotor;
nicer interior w/ a lot of little touches (inevitebly cheapened by ford) leather, better seats, better gauges;
different powertrain mounts;
SS quasy dual exhaust;
bigger injectors;
bigger TB;
EH intake (all years SVT uppers are same, but 2000 is returnless fuel and therefore lower is a little different);
presumably SVT is supposed to have 4-bolt control arms like those in 1st generation, but I've seen 2-bolt...;
extra oil cooler;
different (thicker) radiator;
different air filter element;
same axles
