The 90% flush is basically a drain and refill. This is the same as you can do in your driveway and is harmless and healthy for your ATX. You can (and should) repeat the drain and refill after a short run up and back through the gears to remove as much dirt as possible, The 100% flush will pump the old fluid out under pressure which may/may not be good for the seals, etc. Make sure to use Mercon fluid. The synthetic and synthetic blends seem to run a little smoother imho.
BTW: What is the O/D light issue? Blinking maybe?
