Ok, I am using a ghetto system. I have a Pioneer deck (DEH-P640), a Sony 1000W amp, and am running a 12" JL Audio (12w3 i think). Well I guess I am using something of every brand

The problem is, my amp is cutting out while I am listening to music. For a while it will work just fine, then it will either cut out for 5 seconds at a time, or go into caution and completely turn off (have to turn the car off and then back on to get the amp to turn back on). So, is it my wiring? My friend and I checked the Ohms, the amp can handle 4 and the sub is a dual 2 ohm, and I believe I have it set to 4 right now. I could be wrong, maybe you cant get 4 out of two 2 ohms. That make sense?
I did have it set to one ohm and that pounded, but blew the fuses

Anyone help?
Thanks!