Update:
Went out this morning and checked everything. I took all the vortech stuff under the hood out except the blower. I checked my connections for the battery relocation and checked that all the grounds were clean. Then I reinstalled all the vortech stuff and wire tied everything neatly to make sure nothing was flopping around. (it was a mess before :rolleyes: )
It is a little bit better. I can drive it now, but it still wont hold an idle. I took it for a test spin and it stumbles and struggles up to about 5000 and then it takes off like there is no problem. I did this a few times, and then realized that my air/fuel gauge was reading full lean...almost off the scale

when it was struggling. Then the point were it takes off like normal the gauge would go to full rich.
I realized that the "fix" at 5000 was when the FMU really starts bumping up the fuel pressure under boost.
So I guess this is turned into a fuel delivery problem. Why does it run so lean at idle and low RPM conditions? I should add that the vortech should not have any effect on the fuel delivery since it only starts building boost at about 3000 and that is when the FMU starts bumping up the fuel pressure. I am hoping to be able to diagnose this as a N/A problem.
Any Ideas?