ATX or MTX? If ATX you can run the wire through the teardrop rubber piece on the driver side part of the firewall. If running 4 GA power, get a fused distribution block and correct fuse that allows you to step it down to 8 GA and run it to the amp. If 8 GA just be sure to use the correct fuse in the waterproof holder. If I were installing a 4 channel amp for all 4 door speakers I would mount amp behind the glovebox and run 3 ft patch cables from HU to amp, tape up HU speaker output wires (you won't need them). Use aftermarket HU wiring harness(the one you probably bought when you bought HU) and wire amp speaker outputs to correct speakers, use amp turn on wire from HU(most aftermarket HUs have this wire) to switch amp on/off when car is on/off. Find a good ground and try to keep it as short as possible. Simple.
EDIT: I actually read FACTORY STEREO
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How about
this? Use same method stated above for power/ground, sign up on
www.the12volt.com and look under vehicle info for wiring colors for OEM harness. You could tap into OEM switched 12+ to turn amp on/off with the car. Good luck!