Sorry, I'm a little late to the party here, but I'll throw out some comments for anyone looking at this in the future, lol.
The minimum thickness for a rotor is decided based on a number of factors, from thermal capaicty (how much heat energy the rotor will need to handle, vs. how much material is there to handle it) to structural strength of the rotor, to the pad, rotor, and caliper stackup (if the pad and the rotor are worn down all the way will the caliper piston pop out?) Stuff like that.
In the case of the Warmonger kit, where you use the front rotor on the rear of the car, you are changing virtually all of the other design parameters. You are decreasing the required thermal capacity on the rotor (compared to when it was a front rotor), and you are already thicker than the original rear rotor, so as long as you don't get carried away, its probably fine to run the rotor thinner than min. spec in this particular case.
Something to keep in mind though, is that most shops that turn rotors won't turn beyond the min spec for liability reasons. Also keep in mind that if you need to turn the rotor now to put it on, every time you buy a new rotor you will have to have it turned down.